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gene.h
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1 /* =============================================================================
2  *
3  * gene.h
4  * -- Create random gene
5  *
6  * =============================================================================
7  *
8  * Copyright (C) Stanford University, 2006. All Rights Reserved.
9  * Author: Chi Cao Minh
10  *
11  * =============================================================================
12  *
13  * For the license of bayes/sort.h and bayes/sort.c, please see the header
14  * of the files.
15  *
16  * ------------------------------------------------------------------------
17  *
18  * For the license of kmeans, please see kmeans/LICENSE.kmeans
19  *
20  * ------------------------------------------------------------------------
21  *
22  * For the license of ssca2, please see ssca2/COPYRIGHT
23  *
24  * ------------------------------------------------------------------------
25  *
26  * For the license of lib/mt19937ar.c and lib/mt19937ar.h, please see the
27  * header of the files.
28  *
29  * ------------------------------------------------------------------------
30  *
31  * For the license of lib/rbtree.h and lib/rbtree.c, please see
32  * lib/LEGALNOTICE.rbtree and lib/LICENSE.rbtree
33  *
34  * ------------------------------------------------------------------------
35  *
36  * Unless otherwise noted, the following license applies to STAMP files:
37  *
38  * Copyright (c) 2007, Stanford University
39  * All rights reserved.
40  *
41  * Redistribution and use in source and binary forms, with or without
42  * modification, are permitted provided that the following conditions are
43  * met:
44  *
45  * * Redistributions of source code must retain the above copyright
46  * notice, this list of conditions and the following disclaimer.
47  *
48  * * Redistributions in binary form must reproduce the above copyright
49  * notice, this list of conditions and the following disclaimer in
50  * the documentation and/or other materials provided with the
51  * distribution.
52  *
53  * * Neither the name of Stanford University nor the names of its
54  * contributors may be used to endorse or promote products derived
55  * from this software without specific prior written permission.
56  *
57  * THIS SOFTWARE IS PROVIDED BY STANFORD UNIVERSITY ``AS IS'' AND ANY
58  * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
59  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
60  * PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL STANFORD UNIVERSITY BE LIABLE
61  * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
62  * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
63  * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
64  * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
65  * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
66  * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
67  * THE POSSIBILITY OF SUCH DAMAGE.
68  *
69  * =============================================================================
70  */
71 
72 
73 #ifndef GENE_H
74 #define GENE_H 1
75 
76 
77 #include "bitmap.h"
78 #include "random.h"
79 
80 
81 typedef struct gene {
82  long length;
83  char* contents;
84  bitmap_t* startBitmapPtr; /* used for creating segments */
85 } gene_t;
86 
87 
88 /* =============================================================================
89  * gene_alloc
90  * -- Does all memory allocation necessary for gene creation
91  * -- Returns NULL on failure
92  * =============================================================================
93  */
94 gene_t*
95 gene_alloc (long length);
96 
97 
98 /* =============================================================================
99  * gene_create
100  * -- Populate contents with random gene
101  * =============================================================================
102  */
103 void
104 gene_create (gene_t* genePtr, random_t* randomPtr);
105 
106 
107 /* =============================================================================
108  * gene_free
109  * =============================================================================
110  */
111 void
112 gene_free (gene_t* genePtr);
113 
114 
115 #endif /* GENE_H */
116 
117 
118 /* =============================================================================
119  *
120  * End of gene.h
121  *
122  * =============================================================================
123  */
gene
Definition: gene.h:81
gene_t
struct gene gene_t
bitmap
Definition: bitmap.h:84
gene_create
void gene_create(gene_t *genePtr, random_t *randomPtr)
Definition: gene.c:121
gene::length
long length
Definition: gene.h:82
random
Definition: random.h:86
gene_free
void gene_free(gene_t *genePtr)
Definition: gene.c:151
gene::startBitmapPtr
bitmap_t * startBitmapPtr
Definition: gene.h:84
gene::contents
char * contents
Definition: gene.h:83
gene_alloc
gene_t * gene_alloc(long length)
Definition: gene.c:88